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hal-01395704v1  Article dans une revue
Rayan ChikhiAntoine LimassetPaul Medvedev. Compacting de Bruijn graphs from sequencing data quickly and in low memory
Bioinformatics, Oxford University Press (OUP), 2016, 32 (12), pp.i201 - i208. ⟨10.1093/bioinformatics/btw279⟩
hal-01935562v1  Communication dans un congrès
Rayan ChikhiVladan JovičićStefan KratschPaul MedvedevMartin Milanic et al.  Bipartite Graphs of Small Readability
COCOON 2018 - The 24th International Computing and Combinatorics Conference, Jul 2018, Qingdao, China
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hal-01574824v1  Poster de conférence
Pierre MarijonJean-Stéphane VarréRayan Chikhi. Debugging long-read genome and metagenome assemblies using string graph analysis
JOBIM 2017- Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France.
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hal-01566246v1  Communication dans un congrès
Antoine LimassetGuillaume RizkRayan ChikhiPierre Peterlongo. Fast and scalable minimal perfect hashing for massive key sets
16th International Symposium on Experimental Algorithms, Jun 2017, London, United Kingdom. pp.1 - 11
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hal-01729749v1  Article dans une revue
Rayan ChikhiPaul MedvedevMartin MilaničSofya Raskhodnikova. On the readability of overlap digraphs
Discrete Applied Mathematics, Elsevier, 2016, 205, pp.35-44. ⟨10.1016/j.dam.2015.12.009⟩
hal-01396904v1  Article dans une revue
Kristoffer SahlinRayan ChikhiLars Arvestad. Assembly scaffolding with PE-contaminated mate-pair libraries
Bioinformatics, Oxford University Press (OUP), 2016, 32 (13), pp.1925 - 1932. ⟨10.1093/bioinformatics/btw064⟩
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hal-01575350v1  Communication dans un congrès
Chen SunRobert S. HarrisRayan ChikhiPaul Medvedev. AllSome Sequence Bloom Trees
RECOMB 2017 - 21st Annual International Conference on Research in Computational Molecular Biology, May 2017, Hong Kong, China. ⟨10.1007/978-3-319-56970-3_17⟩
hal-01935568v1  Communication dans un congrès
Anna KuosmanenTopi PaavilainenTravis GagieRayan ChikhiAlexandru Ioan Tomescu et al.  Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-Linear Chaining Extended
RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France