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hal-03827389v1  Poster de conférence
Loïc CoudercErwan GueguenMaxime BruninAreski FlissiGuillemette Marot et al.  TnSeek : analysing Tn-seq data for multiple conditions and multiple species
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2022), Jul 2022, Rennes, France
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hal-03721522v1  Poster de conférence
Julie BaltenneckBen MoussaLoïc CoudercAreski FlissiJacques Pédron et al.  Tn-phyto: essential genomes of nine bacterial phytopathogens
4. International Ewinia workshop (IEW), Jul 2022, Assise, Italy
hal-03461046v1  Article dans une revue
Maude PupinAmmar Abdo. LINGO-DL: a text-based approach for molecular similarity searching
Journal of Computer-Aided Molecular Design, Springer Verlag, 2021, 35 (5), pp.657-665. ⟨10.1007/s10822-021-00383-9⟩
hal-03443183v1  Article dans une revue
Antoine LimassetCamille MarchetMael Kerbiriou. BLight: efficient exact associative structure for k-mers
Bioinformatics, Oxford University Press (OUP), 2021, 37 (18), pp.2858-2865. ⟨10.1093/bioinformatics/btab217⟩
hal-03368750v1  Ouvrages
Thierry LecroqHélène Touzet. String Processing and Information Retrieval
Springer International Publishing, 12944, 2021, Lecture Notes in Computer Science, ⟨10.1007/978-3-030-86692-1⟩
hal-03081813v1  Article dans une revue
Ammar AbdoEissa GhalebNaser AlajmiMaude Pupin. Monomer structure fingerprints: an extension of the monomer composition version for peptide databases
Journal of Computer-Aided Molecular Design, Springer Verlag, 2020, 34 (11), pp.1147-1156. ⟨10.1007/s10822-020-00336-8⟩
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hal-02371117v1  Article dans une revue
Camille MarchetPierre MorisseLolita LecompteArnaud LefebvreThierry Lecroq et al.  ELECTOR : evaluator for long reads correction methods
NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (1), pp.1-12. ⟨10.1093/nargab/lqz015⟩
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tel-02441360v1  Thèse
Pierre Marijon. Novel components at the periphery of long read genome assembly tools
Computer Science [cs]. University of Lille, 2019. English. ⟨NNT : ⟩
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hal-02167433v1  Article dans une revue
Emma RicartValérie LeclèreAreski FlissiMarkus MuellerMaude Pupin et al.  rBAN: retro-biosynthetic analysis of nonribosomal peptides
Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2019, 11 (1), pp.1-14. ⟨10.1186/s13321-019-0335-x⟩
hal-02417587v1  Article dans une revue
Mickael ChevalierEmma RicartEmeline HanozinMaude PupinPhilippe Jacques et al.  Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides
Journal of The American Society for Mass Spectrometry, American Chemical Society 2019, 30 (12), pp.2608-2616. ⟨10.1007/s13361-019-02314-3⟩
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hal-02146404v1  Communication dans un congrès
Enrico PetrucciLaurent NoéCinzia PizziMatteo Comin. Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing
15th International Symposium on Bioinformatics Research and Applications (ISBRA), Jun 2019, Barcelona, Spain. pp.208-219, ⟨10.1007/978-3-030-20242-2_18⟩
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hal-02435116v1  Communication dans un congrès
Pierre MorisseCamille MarchetAntoine LimassetThierry LecroqArnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing, May 2019, Washinton, United States. pp.1-9, ⟨10.1101/546630⟩
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hal-02435086v1  Communication dans un congrès
Camille MarchetMaël KerbiriouAntoine Limasset. Indexing De Bruijn graphs with minimizers
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing, May 2019, Whashinton, United States. pp.1-16, ⟨10.1101/546309⟩
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tel-02124550v1  Thèse
Juraj Michalik. Non-redundant sampling in RNA Bioinformatics
Bioinformatics [q-bio.QM]. Université Paris Saclay (COmUE), 2019. English. ⟨NNT : 2019SACLX009⟩