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hal-02435116v1  Communication dans un congrès
Pierre MorisseCamille MarchetAntoine LimassetThierry LecroqArnaud Lefebvre. CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing, May 2019, Washinton, United States. pp.1-9, ⟨10.1101/546630⟩
hal-03443183v1  Article dans une revue
Antoine LimassetCamille MarchetMael Kerbiriou. BLight: efficient exact associative structure for k-mers
Bioinformatics, Oxford University Press (OUP), 2021, 37 (18), pp.2858-2865. ⟨10.1093/bioinformatics/btab217⟩
hal-01396410v1  Article dans une revue
Samuel BlanquartJean-Stéphane VarréPaul GuertinAmandine PerrinAnne Bergeron et al.  Assisted transcriptome reconstruction and splicing orthology
BMC Genomics, BioMed Central, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩
hal-01395704v1  Article dans une revue
Rayan ChikhiAntoine LimassetPaul Medvedev. Compacting de Bruijn graphs from sequencing data quickly and in low memory
Bioinformatics, Oxford University Press (OUP), 2016, 32 (12), pp.i201 - i208. ⟨10.1093/bioinformatics/btw279⟩
hal-01743104v1  Article dans une revue
Tatiana RocherMathieu GiraudMikaël Salson. Indexing labeled sequences
PeerJ Computer Science, PeerJ, 2018, 4, pp.1-14. ⟨10.7717/peerj-cs.148⟩
hal-01576319v1  Communication dans un congrès
Tatiana RocherMathieu GiraudMikael Salson. Indexer un ensemble de séquences ADN annotées
JOBIM, Jun 2016, Lyon, France
hal-01500115v1  Communication dans un congrès
Juraj MichálikHélène TouzetYann Ponty. Efficient approximations of RNA kinetics landscape using non-redundant sampling
ISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017, Jul 2017, Prague, Czech Republic. pp.i283 - i292, ⟨10.1093/bioinformatics/btx269⟩
hal-01516289v1  Article dans une revue
Anton W LangerakMonika BrüggemannFrédéric DaviNikos DarzentasJacques J M van Dongen et al.  High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges.
Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2017, pp.1602050. ⟨10.4049/jimmunol.1602050⟩
hal-03368750v1  Ouvrage (y compris édition critique et traduction)
Thierry LecroqHélène Touzet. String Processing and Information Retrieval
Springer International Publishing, 12944, 2021, Lecture Notes in Computer Science, ⟨10.1007/978-3-030-86692-1⟩
hal-01237045v1  Article dans une revue
Donald E. K. MartinLaurent Noé. Faster exact distributions of pattern statistics through sequential elimination of states
Annals of the Institute of Statistical Mathematics, Springer Verlag, 2017, 69 (1), pp.231--248. ⟨10.1007/s10463-015-0540-y⟩
hal-01574824v1  Poster
Pierre MarijonJean-Stéphane VarréRayan Chikhi. Debugging long-read genome and metagenome assemblies using string graph analysis
JOBIM 2017- Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
hal-01566246v1  Communication dans un congrès
Antoine LimassetGuillaume RizkRayan ChikhiPierre Peterlongo. Fast and scalable minimal perfect hashing for massive key sets
16th International Symposium on Experimental Algorithms, Jun 2017, London, United Kingdom. pp.1 - 11
hal-03406292v1  Article dans une revue
Paul SimionJitendra NarayanAntoine HoutainAlessandro DerzelleLyam Baudry et al.  Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Science Advances , American Association for the Advancement of Science (AAAS), 2021, 7 (41), pp.eabg4216. ⟨10.1126/sciadv.abg4216⟩
hal-01228138v1  Direction d'ouvrage, Proceedings, Dossier
Hélène Touzet. Algorithms for bioinformatics
Mihai Pop; Hélène Touzet. WABI, Sep 2015, Atlanta, United States. Springer Verlag, 2015, 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings, ⟨10.1007/978-3-662-48221-6⟩